MCP access

Empower Your LLM with ZymeNexus

By integrating ZymeNexus as an MCP server, you can grant your LLM clients direct, structured access to our comprehensive nanozyme database, from catalytic kinetics to research paper metadata.

MCP Tools: Efficient Access to Nanozyme Data

We expose our database operations as standardized tool calls, allowing LLMs to retrieve high-precision nanozyme data without the inaccuracies of web scraping.

  • search_articles(query, filters)Search papers and records by keyword, year, element or catalytic type.
  • search_records(query, filters)Search individual nanozyme records with the same filters.
  • get_article_by_doi(doi)Open one article and its associated nanozyme records from a DOI.
  • filter_by_elements(elements)Find nanozymes that contain selected elements.
  • get_database_stats()Return record counts, year range, element coverage and catalytic-type distribution.
  • validate_nanozyme_record(record)Check whether a contributed nanozyme record has required fields before review.
  • predict_nanozyme_candidate(candidate)Predict catalytic type and kinetic parameters for structured nanozyme candidates.

How to connect

Use a small MCP server between the LLM client and the ZymeNexus database. The LLM receives tool results, while database credentials and write permissions stay on the server side.

  1. Deploy: Host the ZymeNexus MCP server with read-only access to our public database.
  2. Register: Add the server endpoint to your MCP-compatible client, such as Claude Desktop or Cursor.
  3. Query: Enable the LLM to perform deep searches, DOI lookups, and elemental analysis.
  4. Validate: Utilize our data validation tools; note that LLM agents lack direct database write permissions.

Data Integrity & Security

ZymeNexus MCP is built for high-precision scientific research. The server operates under a read-only architecture, ensuring that your LLM workflow remains focused on data retrieval without risks of database corruption. For new contributions, we employ a standard, human-in-the-loop review workflow to guarantee the scientific integrity of all records.

MCP connection example

Configure your MCP-compatible client with the hosted ZymeNexus MCP endpoint. The public endpoint is planned for the zymenexus.com domain.

{
  "mcpServers": {
    "zymenexus": {
      "url": "https://mcp.zymenexus.com/mcp",
      "transport": "streamable-http",
      "tools": ["search_articles", "search_records", "get_article_by_doi", "filter_by_elements", "get_database_stats", "validate_nanozyme_record"]
    }
  }
}